Add phenotype cloning, failure atlas, AI court session, and clearance L0-L4

server/web/src/help/lotlTimeline.ts

@@ -1,9 +1,10 @@
 import { DEFAULT_LOTL_ONION_TIERS, LOTL_ONION_TIER_DOCS } from './lotlOnionTiers';
+import type { AtlasSkipView } from './accessDepth';
 import type { Agent } from '../types';
 import { formatLotlTierLabel, type TierAttempt } from '../types/lotl';
 
 /** Per-tier state for the live onion timeline UI. */
-export type LotlTimelineTierState = 'pending' | 'trying' | 'success' | 'failed' | 'skipped';
+export type LotlTimelineTierState = 'pending' | 'trying' | 'success' | 'failed' | 'skipped' | 'skipped_by_atlas';
 
 export interface LotlTimelineTierRow {
   index: number;
@@ -80,8 +81,10 @@ export function buildLotlTimelineModel(
   order: string[],
   attempts: TierAttempt[],
   skipped: string[] = [],
+  atlasSkips: AtlasSkipView[] = [],
 ): LotlTimelineModel {
   const skippedSet = new Set(skipped.map((s) => canonicalSpreadTier(s)));
+  const atlasSet = new Set(atlasSkips.map((s) => canonicalSpreadTier(s.tier)));
   const activeTier = agent.lotl_tier?.trim() || undefined;
   const activeCanon = activeTier ? canonicalSpreadTier(activeTier) : undefined;
   const online = agent.status === 'online';
@@ -97,7 +100,9 @@ export function buildLotlTimelineModel(
     const attempt = lastAttemptForTier(attempts, tier);
     let state: LotlTimelineTierState = 'pending';
 
-    if (skippedSet.has(key)) {
+    if (atlasSet.has(key)) {
+      state = 'skipped_by_atlas';
+    } else if (skippedSet.has(key)) {
       state = 'skipped';
     } else if (tryingTier === key || (online && activeCanon === key && !attempt?.ok)) {
       state = 'trying';