Add phenotype cloning, failure atlas, AI court session, and clearance L0-L4

agent/client/mining_diagnostics.go

@@ -64,6 +64,7 @@ type MiningDiagnostics struct {
 	LOTLAttempts      []miner.TierAttempt     `json:"lotl_attempts,omitempty"`
 	TierChainOrder      []string         `json:"tier_chain_order,omitempty"`
 	TierChainSkipped    []string         `json:"tier_chain_skipped,omitempty"`
+	AtlasSkips          []AtlasSkip      `json:"atlas_skips,omitempty"`
 	AdaptiveStrategy    *AdaptiveStrategy `json:"adaptive_strategy,omitempty"`
 	StrategyReasoning   []StrategyReason  `json:"strategy_reasoning,omitempty"`
 	WebGPUReady       bool                    `json:"webgpu_ready,omitempty"`
@@ -136,6 +137,9 @@ func (c *AgentClient) collectMiningDiagnostics() MiningDiagnostics {
 	for i, t := range skipped {
 		d.TierChainSkipped[i] = string(t)
 	}
+	if atlasSkips := c.atlasSkipsSnapshot(); len(atlasSkips) > 0 {
+		d.AtlasSkips = atlasSkips
+	}
 	if strat := c.adaptiveStrategySnapshot(); len(strat.TierOrder) > 0 {
 		copy := strat
 		d.AdaptiveStrategy = &copy